Hagai Har-Gil, Yoav Jacobson, Alvar Proenneke, Jochen F Staiger, Omri Tomer, Dan Halperin and Pablo Blinder. Neural Collision Detection: an open source library to study the three-dimensional interactions of neurons and other tree-like structures bioRxiv (Jul, 2021)  10.1101/2021.07.20.452894 [PDF]

Shir Gur, Lior Wolf, Lior Golgher, Pablo Blinder. Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network  arXiv (Aug 4, 2019)  arXiv:1908.01373 [PDF]

Alisa Lubart, Amit Benbenishty, Hagai Har-Gil, Hadas Laufer, Amos Gdalyahu, Yaniv Assaf, Blinder. Cortical microinfarcts caused by single penetrating vessel occlusion lead to widespread reorganization across the entire brain in a CX3CR1 dependent manner.  bioRxiv (October 8, 2018) doi: https://doi.org/10.1101/437509 . [PDF].

Hagai Har-Gil, Lior Golgher, Shai Israel, David Kain, Ori Cheshnovsky, Moshe Parnas, Pablo Blinder. PySight: plug and play photon counting for fast intravital microscopy.  bioRxiv (May 28, 2018)  doi: https://doi.org/10.1101/316125 [PDF]